Work in progress

2. Better artificial intelligence does not mean better models of biology

   arXiv

   Linsley, Feng & Serre

3. Local vs distributed representations: What is the right basis for interpretability?

   J. Colin, L. Goetschalckx, T. Fel, V. Boutin, J. Gopal, T. Serre* & N. Oliver*

2025

2. Enhancing deep neural networks through complex-valued representations and Kuramoto synchronization dynamics

   Transactions on Machine Learning Research

   S. Muzellec, A. Alamia, T. Serre & R. VanRullen

3. Beyond adversarial robustness: Breaking the robustness-alignment trade-off in object recognition

   ICLR 2025 Workshop on Representational Alignment

   P. Feng, D. Linsley, T. Boissin, A.K. Ashok, T. Fel, S. Olaiya & T. Serre

4. Tracking objects that change in appearance with phase synchrony

   International Conference on Learning Representations

   S. Muzellec, D. Linsley, A.K. Ashok, E. Mingolla, G. Malik, R. VanRullen & T. Serre

5. The 3D-PC: a benchmark for visual perspective taking in humans and machines

   International Conference on Learning Representations

   D. Linsley, P. Zhou, A.K. Ashok, A. Nagaraj, G. Gaonkar, F.E. Lewis, Z. Pizlo & T. Serre

6. Evaluating dogs’ real world visual environment and attention

   Cognitive Science

   M.H. Pelgrim, S.S. Raman, T. Serre & D. Buchsbaum

2024

2. Monkeys engage in visual simulation to solve complex problems

   Current Biology

   A. Ahuja, N.Y. Rodriguez, A.K. Ashok, T. Serre, T. Desrochers, D. Sheinberg

3. RTify: Aligning deep neural networks with human behavioral decisions

   Neural Information Processing Systems

   Y. Cheng∗, I.F. Rodriguez∗, S. Chen, T. Watanabe & T. Serre

4. Understanding visual feature reliance through the lens of complexity

   Neural Information Processing Systems

   T. Fel, L. Bethune, A.K. Lampinen, T. Serre & K. Hermann

5. Beyond the doors of perception: Vision transformers represent relations between objects

   Neural Information Processing Systems

   M.A. Lepori, A.R. Tartaglini, W.K. Vong, T. Serre, B.M. Lake & E. Pavlick

6. Latent representation matters: Human-like sketches in one-shot drawing tasks

   Neural Information Processing Systems

   V. Boutin, R. Mukherji, A. Agrawal, S. Muzellec, T. Fel, T. Serre & R. VanRullen

7. Uncovering intermediate variables in transformers using circuit probing

   Conference on Language Modeling

   MA. Lepori, T. Serre & E. Pavlick

8. Gradient strikes back: How filtering out high frequencies improves explanations

   International Conference on Machine Learning

   S. Muzellec, T. Fel, V. Boutin, L. Andeol, R. VanRullen & T. Serre

9. Deceptive learning in histopathology

   Histopathology

   S. Shahamatdar, D. Saeed-Vafa, D. Linsley, F. Khalil, K. Lovinger, L. Li, H. McLeod, S. Ramachandran, T. Serre

2023

2. Ecological data and objectives align deep neural network representations with humans

   "UniReps: Unifying Representations in Neural Models" NeurIPS workshop

   A. Nagaraj, A.K. Ashok, D. Linsley, F.E Lewis, P. Zhou & T. Serre

3. Fixing the problems of deep neural networks will require better training data and learning algorithms

   Behavioral & Brain Sciences

   T. Serre & D. Linsley

4. Unlocking feature visualization for deeper networks with magnitude constrained optimization

   Neural Information Processing Systems

   T. Fel, T. Boissin, V. Boutin, A. Picard, P. Novello, J. Colin, D. Linsley, T. Rousseau, R. Cadène, L. Gardes & T. Serre

5. Computing a human-like reaction time metric from stable recurrent vision models

   Neural Information Processing Systems

   L. Goetschalckx, L.N. Govindarajan, A.K. Ashok, A. Ahuja, D.L. Sheinberg & T. Serre

6. A holistic approach to unifying automatic concept extraction and concept importance estimation

   Neural Information Processing Systems

   T. Fel, V. Boutin, M. Moayeri, R. Cadene, L. Bethune, L. Andeol, M. Chalvidal & T. Serre

7. Break it down: Evidence for structural compositionality in neural networks

   Neural Information Processing Systems

   M.A. Lepori, T. Serre & E. Pavlick

8. Adversarial alignment: Breaking the trade-off between the strength of an attack and its relevance to human perception

   arXiv

   D. Linsley, P. Feng, T. Boissin, A.K. Ashok, T. Fel, S. Olaiya, T. Serre

9. Performance-optimized deep neural networks are evolving into worse models of inferotemporal visual cortex

   Neural Information Processing Systems

   D. Linsley, I.F. Rodriguez, T. Fel, M. Arcaro, S. Sharma, M. Livingstone & T. Serre

10. Learning functional transduction

    Neural Information Processing Systems

    M. Chalvidal, T. Serre & R.VanRullen

11. Diagnosing and exploiting the computational demands of videos games for deep reinforcement learning

    arXiv

    L.N. Govindarajan, R.G. Liu, D. Linsley, A.K. Ashok, M. Reuter, M.J. Frank & T. Serre

12. Diffusion models as artists: Are we closing the gap between humans and machines?

    International Conference on Machine Learning

    V. Boutin, T. Fel, L. Singhal, R. Mukherji, A. Nagaraj, J Colin & T. Serre

13. CRAFT: Concept Recursive Activation FacTorization for explainability

    IEEE Conference on Computer Vision and Pattern Recognition

    T. Fel, A. Picard, L. Bethune, T. Boissin, D. Vigouroux, J. Colin, R. Cadene & T. Serre

14. Transcriptomic profiling of cerebrospinal fluid predicts shunt surgery responses in patients with normal pressure hydrocephalus

    Brain

    Z. Levin, O.P. Leary, V. Mora, S. Kant, S. Brown, K. Svokos, U. Akbar, T. Serre, P. Klinge, A. Fleischmann, M.G. Ruocco

15. GAMR: A Guided Attention Model for (visual) Reasoning

    International Conference on Learning Representations

    M Vaishnav & T. Serre

16. Don’t lie to me! Robust and efficient explainability with verified perturbation analysis

    IEEE Conference on Computer Vision and Pattern Recognition

    T. Fel, M. Ducoffe, D. Vigouroux, R. Cadène, M. Capelle, C. Nicodème, T. Serre

2022

2. The emergence of visual simulation in task-optimized recurrent neural networks

   NeurIPS Workshop on Shared Visual Representations in Human & Machine Intelligence

   A.K. Ashok, L.N. Govindarajan, D. Linsley, D. Sheinber & T. Serre. T

3. Fast inference of spinal neuromodulation for motor control using amortized neural networks

   Journal of Neural Engineering

   L.N. Govindarajan, J.S. Calvert, S.R. Parker, M. Jung, R. Darie, P. Miranda, E. Shaaya, D.A. Borton* & T. Serre*

4. What I cannot predict, I do not understand: A human-centered evaluation framework for explainability methods

   Neural Information Processing Systems

   T. Fel, J. Colin, R. Cadene & T. Serre

5. Harmonizing the object recognition strategies of deep neural networks with humans

   Neural Information Processing Systems

   T. Fel*, I.F. Rodriguez*, D. Linsley* & T. Serre

6. A benchmark for compositional visual reasoning

   Neural Information Processing Systems

   A. Zerroug, M. Vaishnav, J. Colin, S. Musslick & T. Serre

7. Meta-reinforcement learning with self-modifying networks

   Neural Information Processing Systems

   M. Chalvidal, T. Serre, R. VanRullen

8. Diversity vs. recognizability: Human-like generalization in one-shot generative models

   Neural Information Processing Systems

   V. Boutin, L. Singhal, X. Thomas & T. Serre

9. A practitioner’s guide to improve the logistics of spatiotemporal deep neural networks

   Workshop on visual observation and analysis of Vertebrate And Insect Behavior (VAIB)

   L.N. Govindarajan, R. Kakodkar & T. Serre

10. Xplique: A deep learning explainability toolbox

    CVPR workshop on XAI4CV: Explainable Artificial Intelligence for Computer Vision

    T. Fel, L. Hervier, D. Vigouroux, A. Poche, J. Plakoo, R. Cadene, M. Chalvidal, J. Colin, T.. Boissin, L. Bethune, A. Picard, C. Nicodeme, L. Gardes, G. Flandin & T. Serre

11. Decoding family-level features for modern and fossil leaves from computer-vision heat maps

    American Journal of Botany

    E.J. Spagnuolo, P. Wilf & T. Serre

12. How and what to learn: Taxonomizing self-supervised learning for 3D action recognition

    Winter Conference on Applications of Computer Vision

    A. Ben Tanfous, A. Zerroug, D. Linsley & T. Serre

13. How good is your explanation? Algorithmic stability measures to assess the quality of explanations for deep neural networks

    Winter Conference on Applications of Computer Vision

    T Fel, D. Vigouroux, R. Cadene & T. Serre

14. Understanding the computational demands underlying visual reasoning

    Neural Computation

    M.Vaishnav, R. Cadene, A. Alamia, D. Linsley, R. VanRullen & T. Serre

2021

2. Super-human cell death detection with biomarker-optimized neural networks

   Science Advances

   J.W. Linsley, D.A. Linsley, J. Lamstein, G. Ryan, K. Shah, N.A. Castello, V. Oza, J. Kalra, S. Wang, Z. Tokuno, A. Javaherian, T. Serre & S. Finkbeiner

3. Look at the variance! Efficient black-box explanations with Sobol-based sensitivity analysis

   Neural Information Processing Systems

   T. Fel, R. Cadene, M. Chalvidal, M. Cord, D. Vigouroux & T. Serre.

4. KuraNet: systems of coupled oscillators that learn to synchronize

   arXiv

   M. Ricci, M. Jung, Y. Zhang, M. Chalvidal, A. Soni & T. Serre

5. Tracking without re-recognition in humans and machines

   Neural Information Processing Systems

   D. Linsley*, G. Malik*, J.K. Kim, L.N. Govindarajan, E. Mingolla^, T. Serre^

6. The challenge of appearance-free object tracking with feedforward neural networks

   CVPR Workshop on Dynamic Neural Networks Meets Computer Vision

   G. Malik, D. Linsley, T. Serre & E. Mingolla

7. An image dataset of cleared, x-rayed, and fossil leaves vetted to plant family for human and machine learning

   PhytoKeys

   P. Wilf, S.L. Wing, H.W. Meyer, J.A. Rose, R. Saha, T. Serre, N.R. Cúneo, M.P. Donovan, D.M. Erwin, M.A. Gandolfo, E. González-Akre, F. Herrera, S. Hu, A. Iglesias, K.R. Johnson, T.S. Karim & X. Zou

8. Deep learning networks and visual perception

   Oxford Research Encyclopedia of Psychology

   G. Lindsay & T. Serre

9. Go with the flow: Adaptive control for Neural ODEs

   International Conference on Learning Representations

   M. Chalvidal, M. Ricci, R. VanRullen, T. Serre

10. Using computational analysis of behavior to discover developmental change in memory-guided attention mechanisms in childhood

    psychArXiv

    D. Amso, L. Govindarajan, P. Gupta, H. Baumgartner, A. Lynn, K. Gunther, D. Placido, T. Sharma, V. Veerabadran, K. Thakkar, S. Kim & T. Serre

2020

2. Iterative VAE as a predictive brain model for out-of-distribution generalization

   NeurIPS workshop on Shared Visual Representations in Human and Machine Intelligence (SVRHM)

   V. Boutin, A. Zerroug, M. Jung, & Thomas Serre

3. Same-different conceptualization: A machine vision perspective

   Current Opinion in Behavioral Sciences

   M. Ricci, R. Cadene & T. Serre

4. Stable and expressive recurrent vision models

   Neural Information Processing Systems

   D. Linsley, A.K. Ashok, L.N. Govindarajan, R. Liu & T. Serre

5. Hierarchical models of the visual system

   Encyclopedia of Computational Neuroscience

   M. Ricci & T. Serre

6. Discriminating between sleep and exercise-induced fatigue using computer vision and behavioral genetics

   Journal of Neurogenetics

   K.N. Schuch†, L.N. Govindarajan,†, Y. Guo, S.N. Baskoylu, S. Kim, B. Kimia, T. Serre‡, & A.C. Hart‡

7. Differential involvement of EEG oscillatory components in sameness vs. spatial-relation visual reasoning tasks

   eNeuro

   A. Alamia, C. Luo, M. Ricci, J. Kim, T. Serre & R. VanRullen

8. Beyond the feedforward sweep: feedback computations in the visual cortex

   The Year in Cognitive Neuroscience

   G. Kreiman & T. Serre

9. Disentangling neural mechanisms for perceptual grouping

   International Conference on Learning Representations

   J.K. Kim*, D. Linsley*, K. Thakkar & T. Serre

10. Recurrent neural circuits for contours detection

    International Conference on Learning Representations

    D. Linsley*, J.K. Kim*, A. Ashok & T. Serre

2019

2. Development of a deep learning algorithm for the histopathologic diagnosis and gleason grading of prostate cancer biopsies: A pilot study

   European urology focus

   O. Kott*, D. Linsley*, A. Karagounis, C. Jeffers, G. Dragan, Ali Amin, T. Serre** & B. Gershman**

3. Deep learning: the good, the bad and the ugly

   Annual Review of Vision Science

   T. Serre & S. Leone

4. Learning what and where to attend

   International Conference on Learning Representations

   D. Linsley, D. Schiebler, S. Eberhardt & T. Serre

2018

2. Robust neural circuit reconstruction from serial electron microscopy with convolutional recurrent networks

   ArXiv

   D. Linsley, J.K. Kim, D. Berson & T. Serre

3. Early life stress leads to sex differences in development of depressive-like outcomes in a mouse model

   Neuropsychopharmacology

   H. Goodwill, G. Manzano-Nieves, M. Gallo, H.I. Lee, E. Oyerinde, T. Serre & K. Bath

4. Robust pose tracking with a joint model of appearance and shape

   Arxiv

   Y. Guo, L.N. Govindarajan, B. Kimia & T. Serre

5. Learning long-range spatial dependencies with horizontal gated-recurrent units

   Neural Information Processing Systems

   D. Linsley, J. Kim, V. Veerabadran, C. Windolf & T. Serre

6. Complementary surrounds explain diversity of contextual phenomena across visual modalities*

   Psychological Review

   D.A. Mely, D. Linsley & T. Serre

7. Neural computing on a raspberry pi: Applications to zebrafish behavior monitoring*

   Visual observation and analysis of Vertebrate And Insect Behavior (VAIB)

   L. Govindarajan, T. Sharma, R. Colwill & T. Serre

8. Not-So-CLEVR: learning same–different relations strains feedforward neural networks

   Royal Society Interface Focus

   J.K Kim, M. Ricci & T. Serre

9. Same-different problems strain convolutional neural networks

   Annual Meeting of the Cognitive Science Society

   M. Ricci, J.K. Kim & T. Serre

10. TDP-43 gains function due to perturbed auto-regulation in a Tardbp knock-in mouse model of ALS-FTD

    Nature Neuroscience

    M.A. White et al

11. Learning to predict action potentials end-to-end from calcium imaging data

    IEEE Conference on Information Sciences and Systems

    D Linsley, J Linsley, T Sharma, N Meyers & T Serre

2017

2. What are the visual features underlying human versus machine vision?

   IEEE ICCV Workshop on the Mutual Benefit of Cognitive and Computer Vision

   D Linsley, S Eberhardt, T Sharma, P Gupta & T Serre

2016

2. Models of visual categorization

   Wiley Interdisciplinary Reviews: Cognitive Science

   T. Serre

3. How deep is the feature analysis underlying rapid visual categorization?

   Neural Information Processing Systems

   S. Eberhardt, J. Cader & T. Serre

4. Computer vision cracks the leaf code

   Proceedings of the National Academy of Sciences

   P. Wilf, S. Zhang, S. Chikkerur, S. Little, S. Wing & T. Serre

5. Fast ventral stream neural activity enables rapid visual categorization

   Neuroimage

   M. Cauchoix*, S.M. Crouzet*, D. Fize & T. Serre

6. Source modelling of ElectroCorticoGraphy (ECoG) data: Analysis of stability and spatial filtering

   Journal of Neuroscience Methods

   A. Pascarella, C. Todaro, M. Clerc, T. Serre and M. Piana

7. Towards a theory of computation in the visual cortex

   Computational and Cognitive Neuroscience of Vision

   D. Mely & T. Serre

8. An end-to-end generative framework for video segmentation and recognition

   IEEE Winter conference on Applications of Computer Vision

   H. Kuehne, J. Galle & T. Serre

9. A systematic comparison between visual cues for boundary detection

   Vision Research (Special Issue on Vision and the Statistics of the Natural Environment)

   D.A. Mély, J. Kim, M. McGill, Y. Guo and T. Serre

2015

2. Explaining the timing of natural scene understanding with a computational model of perceptual categorization

   PLoS Computational Biology

   I. Sofer, S. Crouzet & T. Serre

3. Unsupervised invariance learning of transformation sequences in a model of object recognition yields selectivity for non-accidental properties

   Frontiers in Computational Neuroscience

   S.M. Parker & T. Serre

4. Reduced expression of MYC increases longevity and enhances healthspan

   Cell

   J.W. Hofmann et al

2014

2. The neural dynamics of face detection in the wild revealed by MVPA

   Journal of Neuroscience

   M. Cauchoix^, G. Barragan-­Jason^, T. Serre* & E.J. Barbeau* (^,* are authors with equal contributions)

3. Neuronal synchrony in complex-valued deep networks

   International Conference on Learning Representations

   D. Reichert & T. Serre

4. The language of actions: Recovering the syntax and semantics of goal-directed human activities

   IEEE Conference on Computer Vision and Pattern Recognition

   H. Kuehne, A. Arlsan & T. Serre

5. Hierarchical models of the visual system

   Encyclopedia of Computational Neuroscience

   T. Serre

6. Learning sparse prototypes for crowd perception via ensemble coding mechanisms

   5th International Workshop on Human Behavior Understanding

   Y. Zhang, S. Zhang, Q. Huang & T. Serre

2013

2. Neural representation of action sequences: How far can a simple snippet-matching model take us?

   Neural Information Processing Systems

   C. Tan, J. Singer, T. Serre, D. Sheinberg & T. Poggio

3. Models of the visual cortex

   Scholarpedia, 8(4):3516.

   T. Poggio & T. Serre

2012

2. The ankyrin 3 (ANK3) bipolar disorder gene regulates mood-related behaviors that are modulated by lithium and stress*

   Biological Psychiatry

   M. Leussis, E. Berry-Scott, M. Saito, H. Jhuang, G. Haan, O. Alkan, C. Luce, J. Madison, P. Sklar, T. Serre, D. Root, T. Petryshen

3. A new biologically inspired color image descriptor

   Proceedings of the European Computer Vision Conference

   J. Zhang, Y. Barhomi, T. Serre

4. The neural dynamics of visual processing in monkey extrastriate cortex: A comparison between univariate and multivariate techniques

   Neural Information Processing Systems – Workshop on Machine Learning and Interpretation in Neuroimaging

   M. Cauchoix, A. Arslan, D. Fize, T. Serre

2011

2. What are the visual features underlying rapid recognition?

   Frontiers in Psychology

   S.M. Crouzet & T. Serre

3. Object decoding with attention in inferior temporal cortex

   Proceedings of the National Academy of Sciences

   Y. Zhang*, E. Meyers*, N. Bichot, T. Serre, T. Poggio, R. Desimone

4. HMDB: A large video database for human motion recognition

   IEEE International Computer Vision Conference

   H. Kuhne, H. Jhuang, E. Garrote, T. Poggio, T. Serre

2010

2. Automated home-cage behavioral phenotyping of mice

   Nature Communications

   H. Jhuang, E. Garrote, X. Yu, V. Khilnani, T. Poggio, A. Steele, T. Serre

3. What and where: A Bayesian inference theory of attention

   Vision Research

   S. Chikkerur, T. Serre, C. Tan, T. Poggio

4. Elements for a neural theory of the processing of dynamic faces

   Dynamic Faces: Insights from Experiments and Computation

   T. Serre, M. Giese

5. Reading the mind’s eye: Decoding category information during mental imagery

   NeuroImage

   L. Reddy, N. Tsuchyia, T. Serre

6. The story of a single cell: Peeking into the semantics of spikes

   IAPR Workshop on Cognitive Information Processing

   R. Kliper, T. Serre, D. Weinshall, I. Nelken

7. A neuromorphic approach to computer vision

   Communications of the ACM

   T. Serre & T. Poggio

2009

2. Attentive processing improves object recognition

   MIT Computer Science and Artificial Intelligence Laboratory Technical Report

   S. Chikkerur, T. Serre, T. Poggio

3. A Bayesian inference theory of attention: neuroscience and algorithms

   MIT Computer Science and Artificial Intelligence Laboratory Technical Report

   S. Chikkerur, T. Serre, T. Poggio

2007

2. Robust object recognition with cortex-like mechanisms

   IEEE Transactions on Pattern Analysis and Machine Intelligence

   T. Serre, L. Wolf, S. Bileschi, M. Riesenhuber & T. Poggio

3. A feedforward architecture accounts for rapid categorization*

   Proceedings of the National Academy of Science

   T. Serre, A. Oliva, T. Poggio

4. A quantitative theory of immediate visual recognition

   Progress in Brain Research, Computational Neuroscience: Theoretical Insights into Brain Function

   T. Serre, G. Kreiman, M. Kouh, C. Cadieu, U. Knoblich, T. Poggio

5. Learning complex cell invariance from natural videos: a plausibility proof

   MIT Computer Science and Artificial Intelligence Laboratory Technical Report

   T. Masquelier, T. Serre, S. Thorpe, T. Poggio

6. A biologically inspired system for action recognition

   Proceedings of the Eleventh IEEE International Conference on Computer Vision

   H. Jhuang, T. Serre, L. Wolf, T. Poggio

7. A component-based framework for face detection and identification

   International Journal of Computer Vision

   B. Heisele, T. Serre, T. Poggio

2006

2. Learning a dictionary of shape-components in visual cortex: Comparison with neurons, humans and machines

   MIT Computer Science and Artificial Intelligence Laboratory Technical Report

   T. Serre

2005

2. A theory of object recognition: computations and circuits in the feedforward path of the ventral stream in primate visual cortex

   MIT Computer Science and Artificial Intelligence Laboratory

   T. Serre, M. Kouh, C. Cadieu, U. Knoblich, G. Kreiman, T. Poggio

3. Learning features of intermediate complexity for the recognition of biological motion

   ICANN 2005

   R. Sigala, T. Serre, T. Poggio, M. Giese

4. Object recognition with features inspired by visual cortex

   IEEE Computer Vision and Pattern Recognition Conference

   T. Serre, L. Wolf, T. Poggio

5. Error weighted classifier combination for multi-modal human identification

   MIT Computer Science and Artificial Intelligence Laboratory Technical Report

   Y. Ivanov, T. Serre, J. Bouvrie

2004

2. Realistic modeling of simple and complex cell tuning in the HMAX model, and implications for invariant object recognition in cortex

   MIT Computer Science and Artificial Intelligence Laboratory

   T. Serre, M. Riesenhuber

3. A new biologically motivated framework for robust object recognition

   MIT Computer Science and Artificial Intelligence Laboratory

   T. Serre, L. Wolf, T. Poggio

4. Using component features for face recognition

   International Conference on Automatic Face and Gesture Recognition

   Y. Ivanov, B. Heisele, T. Serre

2003

2. Hierarchical classification and feature reduction for fast face detection with support vector machines

   Pattern Recognition

   B. Heisele, T. Serre, S. Prentice, T. Poggio

2002

2. On the role of object-specific features for real-world object recognition in biological vision

   Workshop on Biologically Motivated Computer Vision

   T. Serre, J. Louie, M. Riesenhuber, T. Poggio

3. Categorization by learning and combining object parts

   Advances in Neural Information Processing Systems

   B. Heisele, T. Serre, M. Pontil, T. Vetter, T. Poggio

2001

2. Feature reduction and hierarchy of classifiers for fast object detection in video images

   Computer Vision and Pattern Recognition

   B. Heisele, T. Serre, S. Mukherjee, T. Poggio

3. Component-based face detection

   Computer Vision and Pattern Recognition

   B. Heisele, T. Serre, M. Pontil, T. Poggio

2000

2. Feature selection for face detection

   MIT Center for Biological and Computational Learning

   T. Serre, B. Heisele, S. Mukherjee, T. Poggio

"*" denotes supplementary information for the corresponding publication

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